Publications

Prof. Dontsova's Ribosome Laboratory

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  1. Sergiev PV, Lesnyak DV, Bogdanov AA, Dontsova OA.(2006) Identification of Escherichia coli m(2)G methyltransferases: II. The ygjO Gene Encodes a Methyltransferase Specific for G1835 of the 23 S rRNA. J Mol Biol. Nov 17;364(1):26-31. Epub 2006 Sep 8. [MedLine]

  2. Lesnyak DV, Sergiev PV, Bogdanov AA, Dontsova OA.(2006) Identification of Escherichia coli m(2)G methyltransferases: I. The ycbY Gene Encodes a Methyltransferase Specific for G2445 of the 23 S rRNA. J Mol Biol. 2006 Nov 17;364(1):20-5. Epub 2006 Sep 8 [MedLine]

  3. Skvortsov DA, Gasparian NM, Rubtsova MP, Zvereva ME, Fedorova MD, Pavlova LS, Bogdanov AA, Dontsova OA, Kisseljov FL.(2006) Telomerase as a potential marker for early diagnosing cervical carcinoma. Dokl Biochem Biophys. 2006 May-Jun;408:158-60

  4. Shcherbakova DM, Zvereva ME, Shpanchenko OV, Dontsova OA. (2006) [Telomerase: structure and properties of the enzyme, characteristics of the yeast telomerase] Mol Biol (Mosk). 2006 Jul-Aug;40(4):580-94. Review. Russian. [MedLine]

  5. Kovalskaya ON, Sergiev PV, Bogdanov AA, Dontsova OA.(2006) Does a deficiency of the signal recognition particle (SRP)-pathway affect the biosynthesis of its components in Saccharomyces cerevisiae and Escherichia coli? Biochemistry (Mosc). 2006 Jul;71(7):723-9. [MedLine]

  6. Sharanov YS, Zvereva MI, Dontsova OA. (2006) Saccharomyces cerevisiae telomerase subunit Est3p binds DNA and RNA and stimulates unwinding of RNA/DNA heteroduplexes. FEBS Lett. 2006 Aug 21;580(19):4683-90. Epub 2006 Jul 24. [MedLine]

  7. Sergiev, P.V., Lesnyak, D.V., Kiparisov, S.V., Burakovsky, D.E., Leonov, A.A., Bogdanov, A.A., Brimacombe, R., Dontsova, O.A. (2005) Function of the ribosomal E-site: a mutagenesis study. Nucleic Acids Res., 33, 6048-6056. [MedLine]

  8. Sergiev, P.V., Bogdanov, A.A., Dontsova, O.A. (2005) How can elongation factors EF-G and EF-Tu discriminate the functional state of the ribosome using the same binding site? FEBS Lett., 579, 5439-5442. [MedLine]

  9. Kiparisov, S., Petrov, A., Meskauskas, A., Sergiev, P.V., Dontsova, O.A., Dinman, J.D. (2005) Structural and functional analysis of 5S rRNA in Saccharomyces cerevisiae. Mol. Genet. Genomics. 274, 235-247. [MedLine]

  10. Sergiev, P.V., Kiparisov, S.V., Burakovsky, D.E., Lesnyak, D.V., Leonov, A.A., Bogdanov, A.A., Dontsova, O.A. (2005) The Conserved A-site Finger of the 23S rRNA: Just One of the Intersubunit Bridges or a Part of the Allosteric Communication Pathway? J Mol. Biol. 353, 116-123. [MedLine]

  11. Sergiev, P.V., Lesnyak, D.V., Burakovsky, D.E., Kiparisov, S.V., Leonov, A.A., Bogdanov, A.A., Brimacombe, R., Dontsova, O.A. (2005) Alteration in Location of a Conserved GTPase-associated Center of the Ribosome Induced by Mutagenesis Influences the Structure of Peptidyltransferase Center and Activity of Elongation Factor G. J Biol Chem. 280, 31882-31889. [MedLine]

  12. Kubarenko, A.V., Sergiev, P.V., Rodnina, M.V. (2005) ?????? ?????????? [GTPases of translational apparatus]. Mol Biol (Mosk). 39, 746-761. [MedLine]

  13. Shpanchenko O. V., Zvereva M. I., Ivanov P. V., Bugaeva E. Yu., Rozov A. S., Bogdanov A. A., Kalkum M., Isaksson L.,. Nierhaus K. H. and Dontsova O. A. (2005) Stepping tmRNA through the ribosome. J.Biol.Chem., 280, 18368-18374. [MedLine]

  14. Shpachenko, O.V., Ivanov, P.V., Zvereva, M.E., Bogdanov, A.A., Dontsova, O.A. (2005) ?????-??????????: ???????? ????????? ? ???? ? ????? ?????? [Trans-translation: main participants and role in the cell life] Mol Biol (Mosk)., 38, 914-925.

  15. Lavrik, I.N., Sergiev, P.V., Bogdanov, A.A., Zimmermann, R.A., Dontsova O.A. (2004) ???????? Escherichia coli, ??? ?????? ??? ????????? ????? ???????????? ????????? [Escherichia coli ribosomes as the model to test new photoactivated tRNA analogues, containing 6-thioguanosine]. Mol Biol (Mosk)., 38, 937-944. [MedLine]

  16. Bogdanov A.A. (2003) ? ????????? ??????????? ???????? ????????????????????? ???????. [Some structural aspects of the peptidyltransferase reaction] Mol Biol (Mosk)., 37, 511-514. [MedLine]

  17. Leonov, A.A., Sergiev, P.V., Bogdanov, A.A., Brimacombe, R., Dontsova, O.A. (2003) Affinity purification of ribosomes with a lethal G2655C mutation in 23 S rRNA that affects the translocation. J. Biol. Chem., 278, 25664-70. [MedLine].

  18. Dmitriev, P.V., Petrov, A.V., Dontsova, O.A. (2003) Yeast telosome complex: components and their functions. Biochemistry (Mosc), 68, 718-34. [MedLine].

  19. Rinke-Appel, J., Osswald, M., von Knoblauch, K., Mueller, F., Brimacombe, R., Sergiev, P., Avdeeva, O., Bogdanov A,, Dontsova, O. (2002), Crosslinking of 4.5S RNA to the Escherichia coli ribosome in the presence or absence of the protein Ffh. RNA, 8, 612-625. [MedLine]

  20. Ivanov, P.V., Zvereva, M.I., Shpanchenko, O.V., Dontsova, O.A., Bogdanov, A.A., Aglyamova, G.V., Lim, V.I., Teraoka, Y., Nierhaus, K.H. (2002) How does tmRNA move through the ribosome? FEBS Lett., 514, 55-9. [MedLine]. [Full Text].

  21. Dmitriev, P.V., Prusov, A.N., Petrov, A.V., Dontsova, O.A., Zatsepina, O.V., Bogdanov, A.A. (2002) Mouse chromocenters contain associated telomeric DNA and telomerase activity. Dokl. Biol. Sci., 383, 171-4. [Medline].

  22. Avdeeva, O.N., Myasnikov, A.G., Sergiev, P.V., Bogdanov, A.A., Brimacombe, R., Dontsova, O.A. (2002) Construction of the 'minimal' SRP that interacts with the translating ribosome but not with specific membrane receptors in Escherichia coli. FEBS Lett., 514, 70-3. [Medline]. [Full Text].

  23. Smith, M.W., Meskauskas, A., Wang, P., Sergiev, P.V., Dinman, J.D. (2001) Saturation Mutagenesis of 5S rRNA in Saccharomyces cerevisiae. Mol. Cell. Biol., 21, 8264-8275. [[Medline] Full Text]

  24. Zvereva, M.I., Ivanov, P.V., Teraoka, Y., Topilina, N.I., Dontsova, O.A., Bogdanov, A.A., Kalkum, M., Nierhaus, K.H., Shpanchenko, O.V. (2001) Complex of transfer-messenger RNA and elongation factor Tu. Unexpected modes of interaction. J. Biol. Chem., 276, 47702-8. [Medline]. [Full Text].

  25. Sergiev, P., Leonov, A., Dokudovskaya, S., Shpanchenko, O., Dontsova, O., Bogdanov, A., Rinke-Appel, J., Mueller, F., Osswald, M., von Knoblauch, K., Brimacombe, R. (2001) Correlating the X-ray structures for halo- and thermophilic ribosomal subunits with biochemical data for the Escherichia coli ribosome. Cold Spring Harb. Symp. Quant. Biol., 66, 87-100. [Medline].

  26. Sergiev, P.V., Dontsova, O.A., Bogdanov, A.A. (2001) Study of ribosome structure using the biochemical methods: judgment day. Mol. Biol. (Mosk), 35, 559-83. [Medline].

  27. Petrov, A.V., Dmitriev, P.V., Sokolov, K.A., Dontsova, O.A. (2001) A specific DNA-dependent DNA polymerase is associated with Saccharomyces cerevisiae telomerase. Biochemistry (Mosc), 66, 1361-7. [Medline]. [Full Text].

  28. Matadeen, R., Sergiev, P., Leonov, A., Pape, T., van der Sluis, E., Mueller, F., Osswald, M., von Knoblauch, K., Brimacombe, R., Bogdanov, A., van Heel, M., Dontsova, O. (2001) Direct localization by cryo-electron microscopy of secondary structural elements in Escherichia coli 23S rRNA which differ from the corresponding regions in Haloarcula marismortui. J. Mol. Biol., 307, 1341-9. [Medline]. [Full Text].

  29. Lavrik, I.N., Avdeeva, O.N., Dontsova, O.A., Froeyen, M., Herdewijn, P.A. (2001) Translational properties of mHNA, a messenger RNA containing anhydrohexitol nucleotides. Biochemistry, 40, 11777-84. [Medline].

  30. Kubarenkom, A.V., Sergiev, P.V., Bogdanov, A.A., Brimacombe, R., Dontsova, O.A. (2001) A protonated base pair participating in rRNA tertiary structural interactions. Nucleic Acids Res., 29, 5067-70. [Medline]. [Full Text].

  31. Zvereva, M.E., Shpanchenko, O.V., Nierhaus, K., Dontsova, O.A. (2000) Ribosomal protein TL5 of T. thermophilus is incorporated in the E. coli 50S ribosomal subunit. Dokl. Biochem., 374, 199-201. [Medline].

  32. Zvereva, M.E., Shpanchenko, O.V., Dontsova, O.A., Bogdanov, A.A. (2000) Structure and function of tmRNA (10Sa RNK). Mol. Biol. (Mosk)., 34, 1081-9. [Medline].

  33. Sergiev, P.V., Bogdanov, A.A., Dahlberg, A.E., Dontsova, O.A. (2000)Mutations at position A960 of I 23S ribosomal RNA influence the structure of 5S ribosomal RNA and the peptidyltransferase region of 23S ribosomal RNA. J. Mol. Biol., 299, 79-89. [Medline]. [Full Text].

  34. Leonov, A.A., Sergiev, P.V., Dontsova, O.A., Bogdanov, A.A. (1999) Directed introduction of photoaffinity reagents in internal segments of RNA. Mol. Biol. (Mosk), 33, 1063-73. [Medline].

  35. Zvereva, M.I., Shpanchenko, O.V., Dontsova, O.A., Nierhaus, K.H., Bogdanov, A.A. (1998) Effect of point mutations at position 89 of the E.coli 5S rRNA on the assembly and activity of the large ribosomal subunit. FEBS Lett., 421, 249-51. [Medline]. [Full Text].

  36. Shpanchenko, O.V., Dontsova, O.A., Bogdanov, A.A., Nierhaus, K.H. (1998) Structure of 5S rRNA within the Escherichia coli ribosome: iodine-induced cleavage patterns of phosphorothioate derivatives. RNA, 4, 1154-64. [Medline].

  37. Sergiev, P., Dokudovskaya, S., Romanova, E., Topin, A., Bogdanov, A., Brimacombe, R., Dontsova, O. (1998) The environment of 5S rRNA in the ribosome: cross-links to the GTPase-associated area of 23S rRNA. Nucleic Acids Res., 26, 2519-25. [Medline]. [Full Text].

  38. Sergiev, P.V., Lavrik, I.N., Dokudovskaya, S.S., Dontsova, O.A., Bogdanov, A.A. (1998) Structure of the decoding center of the ribosome. Biochemistry (Mosc), 63, 963-76. [Medline]. [Full Text].

  39. Petrov, A.V., Dokudovskaya, S.S., Sokolov, K.A., Lavrik, O.I., Favre, A., Dontsova, O.A., Bogdanov, A.A. (1998) [Medline]. [Full Text].

  40. Baranov, P.V., Sergiev, P.V., Dontsova, O.A., Bogdanov, A.A., Brimacombe, R. (1998)The Database of Ribosomal Cross links (DRC). Nucleic Acids Res., 26, 187-9. [Medline]. [Full Text].

  41. Baranov, P.V., Gurvich, O.L., Bogdanov, A.A., Brimacombe, R., Dontsova, O.A. (1998) New features of 23S ribosomal RNA folding: the long helix 41-42 makes a "U-turn" inside the ribosome. RNA, 4, 658-68. [Medline].

  42. Sergiev, P.V., Lavrik, I.N., Wlasoff, V.A., Dokudovskaya, S.S., Dontsova, O.A., Bogdanov, A.A., Brimacombe, R. (1997) The path of mRNA through the bacterial ribosome: a site-directed crosslinking study using new photoreactive derivatives of guanosine and uridine. RNA, 3, 464-75. [Medline].

  43. Dokudovskaya, S.S., Petrov, A.V., Dontsova, O.A., Bogdanov, A.A. (1997) Telomerase is an unusual RNA-containing enzyme. A review. Biochemistry (Mosc), 62, 1206-15. [Medline].

  44. Baranov, P.V., Dokudovskaya, S.S., Oretskaya, T.S., Dontsova, O.A., Bogdanov, A.A., Brimacombe, R. (1997) A new technique for the characterization of long-range tertiary contacts in large RNA molecules: insertion of a photolabel at a selected position in 16S rRNA within the Escherichia coli ribosome. Nucleic Acids Res., 25, 2266-73. [Medline]. [Full Text].

  45. Shpanchenko, O.V., Zvereva, M.I., Dontsova, O.A., Nierhaus, K.H., Bogdanov, A.A. (1996) 5S rRNA sugar-phosphate backbone protection in complexes with specific ribosomal proteins. FEBS Lett., 394, 71-5. [Medline]. [Full Text].

  46. Dokudovskaya, S., Dontsova, O., Shpanchenko, O., Bogdanov, A., Brimacombe, R. (1996) Loop IV of 5S ribosomal RNA has contacts both to domain II and to domain V of the 23S RNA. RNA, 2, 146-52. [Medline].

  47. Dabrowski, M., Junemann, R., Schafer, M.A., Spahn, C.M., Nierhaus, K.H., Alekseeva, E.V., Dontsova, O.A., Shpanchenko, O.V., Bogdanov, A.A. (1996) Phosphate sites of RNA-ligands interacting with ribosome at different stages of translation. Thiophosphate method of analysis. Biokhimiia, 61, 1971-83. [Medline].

  48. Alexeeva, E.V., Shpanchenko, O.V., Dontsova, O.A., Bogdanov, A.A., Nierhaus, K.H. (1996) Interaction of mRNA with the Escherichia coli ribosome: accessibility of phosphorothioate-containing mRNA bound to ribosomes for iodine cleavage. Nucleic Acids Res., 24, 2228-35. [Medline]. [Full Text].

  49. Bogdanova, S.L., Degtiarev, A.I., Baranov, P.V., Dokudovskaia, S.S., Lavrik, I.N., Dontsova, O.A., Oretskaia, T.S., Krynetskaia, I.F., Shabarova, Z.A., Bogdanov, A.A. (1996) Directed cleavage of the 16S rRNA molecule at a single internucleotide bond. Biokhimiia, 60, 297-307. [Medline].

  50. Bogdanov, A.A., Lavrik, I.N., Dokudovskaia, S.S., Dontsova, O.A. (1995) Structure and function of 5S rRNA in ribosomes. Mol. Biol. (Mosk), 29, 1218-27. [Medline].

  51. Bogdanov, A.A., Dontsova, O.A., Dokudovskaya, S.S., Lavrik, I.N. (1995) Structure and function of 5S rRNA in the ribosome. Biochem. Cell Biol., 73, 869-76. [Medline].

  52. Rinke-Appel, J., Junke, N., Brimacombe, R., Lavrik, I., Dokudovskaya, S., Dontsova, O., Bogdanov, A. (1994) Contacts between 16S ribosomal RNA and mRNA, within the spacer region separating the AUG initiator codon and the Shine-Dalgarno sequence; a site-directed cross-linking study. Nucleic Acids Res., 22, 3018-25. [Medline].

  53. Dontsova, O., Tishkov, V., Dokudovskaya, S., Bogdanov, A., Doring, T., Rinke-Appel, J., Thamm, S., Greuer, B., Brimacombe, R. (1994) Stem-loop IV of 5S rRNA lies close to the peptidyltransferase center. Proc. Natl. Acad. Sci. USA, 91, 4125-9. [Medline]. [Full Text].

  54. Rinke-Appel, J., Junke, N., Brimacombe, R., Dukudovskaya, S., Dontsova, O., Bogdanov, A. (1993) Site-directed cross-linking of mRNA analogues to 16S ribosomal RNA; a complete scan of cross-links from all positions between '+1' and '+16' on the mRNA, downstream from the decoding site. Nucleic Acids Res., 21, 2853-9. [Medline].

  55. Dokudovskaya, S.S., Dontsova, O.A., Bogdanova, S.L., Bogdanov, A.A., Brimacombe, R. (1993) mRNA-ribosome interactions. Biotechnol. Appl. Biochem., 18, 149-55. [Medline]. .

  56. Dontsova, O., Dokudovskaya, S., Kopylov, A., Bogdanov, A., Rinke-Appel, J., Junke, N., Brimacombe, R. (1992) Three widely separated positions in the 16S RNA lie in or close to the ribosomal decoding region; a site-directed cross-linking study with mRNA analogues. EMBO J., 11, 3105-16. [Medline].

  57. Dontsova, O.A., Rosen, K.V., Bogdanova, S.L., Skripkin, E.A., Kopylov, A.M., Bogdanov, A.A. (1992) Identification of the Escherichia coli 30S ribosomal subunit protein neighboring mRNA during initiation of translation. Biochimie, 74, 363-71. [Medline].

  58. Dontsova, O., Kopylov, A., Brimacombe, R. (1991) The location of mRNA in the ribosomal 30S initiation complex; site-directed cross-linking of mRNA analogues carrying several photo-reactive labels simultaneously on either side of the AUG start codon. EMBO J., 10, 2613-20. [Medline].

  59. Dontsova, O.A., Efimov, A.V., Kopylov, A.M. (1990) The 5S rRNA-protein complex of Escherichia coli studied by carbodiimide modification. Nauchnye Dokl. Vyss. Shkoly Biol. Nauki, 2, 22-30. [Medline].

  60. Dontsova, O.A., Bogdanova, S.L., Rozen, K.V., Skriabin, G.A., Skripkin, E.A., Kopylov, A.M., Bogdanov, A.A. (1990) Photoaffinity modification of small ribosomal subunits of Escherichia coli with 5'-diaziryl derivatives of mRNA. Dokl. Akad. Nauk SSSR, 313, 730-3. [Medline].

  61. Dontsova, O.A., Bogdanova, S.L., Kopylov, A.M. (1989) Synthesis in E.coli cells of short RNA encoded in plasmids. Biokhimiia, 54, 870-6. [Medline].



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